娱记同学呀2024年11月16日发布: 故障分析 MySQL 耗尽主机内存一例分析
作者：浦上晟周 | 责任编辑:Admin
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作者：付祥
现居珠海，主要负责 Oracle、MySQL、mongoDB 和 Redis 维护工作。
本文来源：原创投稿
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异常现象
开发人员反馈，有一台服务器内存几乎被 MySQL 耗尽了，执行 top 命令，输出如下：
这台机器是个测试环境，MySQL 是开发自己安装的，数据库版本 5.6.51 ，机器总内存32G，MySQL 占了29G。
分析过程
查看 MySQL 启动时间发现1个星期前才启动，猜测之前由于主机内存耗尽触发了 OOM ，查看 MySQL 错误日志，发现每隔10几天，MySQL 就异常关闭一次：
2022-02-24 03:03:42 20981 [Note] InnoDB: Database was not shutdown normally! 2022-03-13 02:31:40 4134 [Note] InnoDB: Database was not shutdown normally! 2022-03-31 02:31:08 6846 [Note] InnoDB: Database was not shutdown normally! 2022-04-12 02:31:41 1159 [Note] InnoDB: Database was not shutdown normally! 2022-04-23 04:41:51 6773 [Note] InnoDB: Database was not shutdown normally! 2022-05-04 02:31:52 2499 [Note] InnoDB: Database was not shutdown normally! 2022-05-13 04:56:06 23010 [Note] InnoDB: Database was not shutdown normally! 2022-05-30 02:31:33 3244 [Note] InnoDB: Database was not shutdown normally!查看操作系统日志，进一步验证了 MySQL 耗尽主机内存，触发 OOM ：
# grep oom-killer /var/log/messages* /var/log/messages-20220605:May 30 02:31:30 vm10-136-9-24 kernel: mysqld invoked oom-killer: gfp_mask=0x201da, order=0, oom_score_adj=0查看 my.cnf 配置文件，发现几乎都是默认配置，innodb_buffer_pool_size 等于默认值128M :
mysql> show variables like innodb_buffer_pool_size; +-------------------------+-----------+ | Variable_name | Value | +-------------------------+-----------+ | innodb_buffer_pool_size | 134217728 | +-------------------------+-----------+当前数据库有500多个连接，都是 Sleep 状态，从 MySQL 错误日志发现 performance_schema 下的表结构全是错误的，估计 MySQL 版本做了升级，没有执行 upgrade升 级数据字典，意味着一些内存诊断信息便不能从 PS 获取：
2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.cond_instances has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_current has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_history has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_history_long has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_summary_by_host_by_event_name has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_summary_by_instance has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_summary_by_thread_by_event_name has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_summary_by_user_by_event_name has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_summary_by_account_by_event_name has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.events_waits_summary_global_by_event_name has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.file_instances has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.file_summary_by_event_name has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.file_summary_by_instance has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.host_cache has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.mutex_instances has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.objects_summary_global_by_type has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.performance_timers has the wrong structure 2022-06-09 11:19:08 27468 [ERROR] Native table performance_schema.rwlock_instances has the wrong structure .....省略输出......... mysql> show variables like performance_schema; +--------------------+-------+ | Variable_name | Value | +--------------------+-------+ | performance_schema | ON | +--------------------+-------+ 1 row in set (0.00 sec) mysql> use performance_schema Database changed mysql> show tables; Empty set (0.00 sec)show engine innodb status ，截取内存信息如下：
BUFFER POOL AND MEMORY ---------------------- Total memory allocated 137363456; in additional pool allocated 0 Dictionary memory allocated 736104382 Buffer pool size 8191 Free buffers 1024 Database pages 6851 Old database pages 2508 Modified db pages 0 Pending reads 0 Pending writes: LRU 0, flush list 0, single page 0 Pages made young 1280745, not young 1337956473 1.59 youngs/s, 0.10 non-youngs/s Pages read 97753005, created 121179, written 1163360 0.06 reads/s, 0.88 creates/s, 12.12 writes/s Buffer pool hit rate 1000 / 1000, young-making rate 0 / 1000 not 0 / 1000 Pages read ahead 0.00/s, evicted without access 0.00/s, Random read ahead 0.00/s LRU len: 6851, unzip_LRU len: 0 I/O sum[597]:cur[0], unzip sum[0]:cur[0]数据字典分配内存竟然达到700M，通过 lsof 命令发现，MySQL 打开了大量的 MyISAM 表分区文件，每个分区占用2个文件句柄，这应该是其内存使用高的原因：
lsof|grep "#P#"|grep -E "MYD$|MYI$"|wc -l 29826MyISAM 存储引擎，数据块通过操作系统缓存，索引块由 key buffer 缓存，大小通过参数 key_buffer_size 控制，当前默认值如下：
mysql> show variables like key_buffer_size; +-----------------+---------+ | Variable_name | Value | +-----------------+---------+ | key_buffer_size | 8388608 | +-----------------+---------+ 1 row in set (0.00 sec)MySQL 默认使用 GLIBC 内存分配器，通过 gdb 调用 malloc_stats()函数分析内存使用情况：
gdb -ex "call (void) malloc_stats()" --batch -p $(pidof mysqld)上述命令执行完成后，会将内存使用情况打印到 MySQL 错误日志：
Arena 0: system bytes = 2001301504 in use bytes = 250961264 Arena 1: system bytes = 12181504 in use bytes = 1000800 Arena 2: system bytes = 164257792 in use bytes = 8032368 Arena 3: system bytes = 1363267584 in use bytes = 468958176 Arena 4: system bytes = 335654912 in use bytes = 708240 Arena 5: system bytes = 2150400 in use bytes = 254576 Arena 6: system bytes = 32059392 in use bytes = 1078000 Arena 7: system bytes = 671559680 in use bytes = 4884688 Arena 8: system bytes = 44052480 in use bytes = 935904 Arena 9: system bytes = 43302912 in use bytes = 2630256 Arena 10: system bytes = 21729280 in use bytes = 618848 Arena 11: system bytes = 702341120 in use bytes = 2745648 Arena 12: system bytes = 63066112 in use bytes = 1537360 Arena 13: system bytes = 467128320 in use bytes = 2199648 Arena 14: system bytes = 1682067456 in use bytes = 23873712 Arena 15: system bytes = 1613938688 in use bytes = 929648 Arena 16: system bytes = 150749184 in use bytes = 1593600 Arena 17: system bytes = 1554382848 in use bytes = 343840 Arena 18: system bytes = 514367488 in use bytes = 38418976 Arena 19: system bytes = 88248320 in use bytes = 3488848 Arena 20: system bytes = 703705088 in use bytes = 5674256 Arena 21: system bytes = 469848064 in use bytes = 417632 Arena 22: system bytes = 172064768 in use bytes = 2259808 Arena 23: system bytes = 391884800 in use bytes = 763104 Arena 24: system bytes = 1414455296 in use bytes = 26260272 Arena 25: system bytes = 316915712 in use bytes = 596432 Arena 26: system bytes = 702865408 in use bytes = 623840 Arena 27: system bytes = 516800512 in use bytes = 371040 Arena 28: system bytes = 175669248 in use bytes = 3301776 Arena 29: system bytes = 26525696 in use bytes = 1406640 Arena 30: system bytes = 51970048 in use bytes = 375072 Arena 31: system bytes = 525869056 in use bytes = 515651936 Arena 32: system bytes = 363950080 in use bytes = 696912 Arena 33: system bytes = 1816637440 in use bytes = 13213184 Arena 34: system bytes = 1470251008 in use bytes = 13774880 Arena 35: system bytes = 703832064 in use bytes = 2624144 Arena 36: system bytes = 115941376 in use bytes = 3248720 Arena 37: system bytes = 777551872 in use bytes = 978896 Arena 38: system bytes = 45363200 in use bytes = 45081504 Arena 39: system bytes = 374652928 in use bytes = 341904 Arena 40: system bytes = 26222592 in use bytes = 25993760 Arena 41: system bytes = 20140032 in use bytes = 386384 Arena 42: system bytes = 702484480 in use bytes = 700284096 Arena 43: system bytes = 54947840 in use bytes = 1650880 Arena 44: system bytes = 516972544 in use bytes = 3178016 Arena 45: system bytes = 66084864 in use bytes = 1186080 Arena 46: system bytes = 1672466432 in use bytes = 3988320 Arena 47: system bytes = 3727360 in use bytes = 1518624 Arena 48: system bytes = 471752704 in use bytes = 66314288 Arena 49: system bytes = 491962368 in use bytes = 2521952 Arena 50: system bytes = 12431360 in use bytes = 3573216 Arena 51: system bytes = 58073088 in use bytes = 720512 Arena 52: system bytes = 24412160 in use bytes = 1166080 Arena 53: system bytes = 34963456 in use bytes = 1003856 Arena 54: system bytes = 28745728 in use bytes = 3283728 Arena 55: system bytes = 703614976 in use bytes = 423398352 Arena 56: system bytes = 31150080 in use bytes = 30834032 Arena 57: system bytes = 397848576 in use bytes = 757680 Arena 58: system bytes = 416169984 in use bytes = 1561520 Arena 59: system bytes = 702533632 in use bytes = 4707824 Arena 60: system bytes = 26615808 in use bytes = 8339040 Arena 61: system bytes = 174006272 in use bytes = 317760 Arena 62: system bytes = 3846144 in use bytes = 3525664 Arena 63: system bytes = 26365952 in use bytes = 693104 Total (incl. mmap): system bytes = 1166893056 in use bytes = 348358880 max mmap regions = 55 max mmap bytes = 1919492096将上述输出存入临时文件 /tmp/fx.txt ，计算分配给 MySQL 内存和 MySQL 使用内存如下：
# awk {if($1 == "system") total+=$NF; else if ($1 == "in") used+=$NF }END{print total/1024/1024/1024,used/1024/1024/1024} /tmp/fx.txt 28.4044 2.87976分配给 MySQL 内存28.4G，MySQL 使用内存才2.8G，表明内存碎片化太严重了，使用 google 内存分配器 tcmalloc 重启 MySQL 十几天后，top 命令观察 MySQL 占用内存稳定在5G：
小结
jemalloc 和 tcmalloc 之类的内存分配器在一些场景，尤其是在多核 CPU 和高并发工作负载下能提供更高效的性能，例如我们熟知的 mongodb 使用 tcmalloc ，redis 使用 jemalloc 。
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最新评论
约翰尼·诺克斯维尔 2024-11-15 17:17
in use bytes = 2521952
IP:40.71.9.*
胡丹丹 2024-11-15 22:24
.
IP:74.10.3.*
莫莉·香侬 2024-11-15 19:14
Arena 60:
IP:34.47.7.*